Hi,
Has anyone had problem with SOAPaligner? I make an index then start align below
./2bwt-builder ${adiref_file}
./soap -a s_1_sequence.txt.trimmed.single -D adiref.fa.index -o soapTestOut.txt -p 8 -u unmap.fq
Then I got this error.
Begin Program SOAPaligner/soap2
Mon May 23 17:05:43 2011
Reference: adiref.fa.index
Query File a: s_1_sequence.txt.trimmed.single
Output File: soapTestOut.txt
unmap.fq
Load Index Table ...
Load Index Table OK
Begin Alignment ...
File Error: unrecognized file
I have no idea which file that is the unrecognized file. One thing that is strange is .index.amb file is empty. Is it normal?
Any suggestion will be great.
Thanks,
Sutada
Has anyone had problem with SOAPaligner? I make an index then start align below
./2bwt-builder ${adiref_file}
./soap -a s_1_sequence.txt.trimmed.single -D adiref.fa.index -o soapTestOut.txt -p 8 -u unmap.fq
Then I got this error.
Begin Program SOAPaligner/soap2
Mon May 23 17:05:43 2011
Reference: adiref.fa.index
Query File a: s_1_sequence.txt.trimmed.single
Output File: soapTestOut.txt
unmap.fq
Load Index Table ...
Load Index Table OK
Begin Alignment ...
File Error: unrecognized file
I have no idea which file that is the unrecognized file. One thing that is strange is .index.amb file is empty. Is it normal?
Any suggestion will be great.
Thanks,
Sutada
Comment