Everything starting with bowtie2 is an executable there. Just move them all into your path.
Seqanswers Leaderboard Ad
Collapse
Announcement
Collapse
No announcement yet.
X
-
But what should I do to move them into the path.
I also installed the Bowtie2 on a linux system. After unzip, the bowtie2 folder contains AUTHORS bowtie2-align-debug bowtie2-inspect example MANUAL.markdown TUTORIAL
bowtie2 bowtie2-build bowtie2-inspect-debug LICENSE NEWS VERSION
bowtie2-align bowtie2-build-debug doc MANUAL scripts
and three subfolers doc, example, and scripts.
Comment
-
Originally posted by patrickwang View PostBut what should I do to move them into the path.
I also installed the Bowtie2 on a linux system. After unzip, the bowtie2 folder contains AUTHORS bowtie2-align-debug bowtie2-inspect example MANUAL.markdown TUTORIAL
bowtie2 bowtie2-build bowtie2-inspect-debug LICENSE NEWS VERSION
bowtie2-align bowtie2-build-debug doc MANUAL scripts
and three subfolers doc, example, and scripts.
Code:export PATH="$PATH:~/bin"
Comment
-
Hello! I'm a newbie trying to install bowtie.
I unzipped the source file and then I compiled it
After I tried to add it to my path, I see this message in my shell
"Il comando non può essere localizzato perché "/usr/bin" non è incluso nella variabile d'ambiente PATH".
No command function anymore... what can I do to solve this problem?
Comment
-
So include /usr/bin in the PATH:
Code:export PATH="$PATH:/usr/bin"
Comment
-
If you are logged into your user account then you should be able to edit your .bashrc file by using an appropriate text editor such as pico/nano by doing
Code:$ pico ~/.bashrc
Code:$ source ~/.bashrc
Last edited by GenoMax; 08-04-2014, 08:16 AM.
Comment
-
Thank you so much... my shell now is functional.
Now I have to add bowtie2 to path, which was the cause for the previous problem.
I downloaded -source.zip, unzipped it and then compiled.
However, if I digit "bowtie2", I have this message "command not found".
What's the problem? what I have to do to add bowtie2 to PATH without damage in my system ?
Comment
-
Bow-tie
Hey Guys,
I am new here. I have a problem to run bow tie on my mac. Here is my command line on terminal: Mds-MacBook-Pro:bioinformatics ZILLURRAHMAN$ cd bow-tie
Mds-MacBook-Pro:bow-tie ZILLURRAHMAN$ ls
2012_Lab_Exercise_2.doc
CGRL - Installing and Using Bowtie.webarchive
How to install Bowtie - SEQanswers.webarchive
Installation and use of Bowtie | Bioinformatics at Viikki campus.webarchive
Trinity (runs local) | Applied Bioinformatics Journal Club.webarchive
bowtie2-2.2.3
ernestturro_mappingpractical.pdf
Mds-MacBook-Pro:bow-tie ZILLURRAHMAN$ cd bowtie2-2.2.3
Mds-MacBook-Pro:bowtie2-2.2.3 ZILLURRAHMAN$ make
Then it showed an error message like this:
Agreeing to the Xcode/iOS license requires admin privileges, please re-run as root via sudo.
What should I do now?
Comment
Latest Articles
Collapse
-
by seqadmin
Next-generation sequencing (NGS) and quantitative polymerase chain reaction (qPCR) are essential techniques for investigating the genome, transcriptome, and epigenome. In many cases, choosing the appropriate technique is straightforward, but in others, it can be more challenging to determine the most effective option. A simple distinction is that smaller, more focused projects are typically better suited for qPCR, while larger, more complex datasets benefit from NGS. However,...-
Channel: Articles
10-18-2024, 07:11 AM -
-
by seqadmin
Non-coding RNAs (ncRNAs) do not code for proteins but play important roles in numerous cellular processes including gene silencing, developmental pathways, and more. There are numerous types including microRNA (miRNA), long ncRNA (lncRNA), circular RNA (circRNA), and more. In this article, we discuss innovative ncRNA research and explore recent technological advancements that improve the study of ncRNAs.
Nobel Prize for MicroRNA Discovery
This week,...-
Channel: Articles
10-07-2024, 08:07 AM -
ad_right_rmr
Collapse
News
Collapse
Topics | Statistics | Last Post | ||
---|---|---|---|---|
New Model Aims to Explain Polygenic Diseases by Connecting Genomic Mutations and Regulatory Networks
by seqadmin
Started by seqadmin, Yesterday, 05:31 AM
|
0 responses
10 views
0 likes
|
Last Post
by seqadmin
Yesterday, 05:31 AM
|
||
Started by seqadmin, 10-24-2024, 06:58 AM
|
0 responses
20 views
0 likes
|
Last Post
by seqadmin
10-24-2024, 06:58 AM
|
||
New AI Model Designs Synthetic DNA Switches for Targeted Gene Expression in Specific Cell Types
by seqadmin
Started by seqadmin, 10-23-2024, 08:43 AM
|
0 responses
48 views
0 likes
|
Last Post
by seqadmin
10-23-2024, 08:43 AM
|
||
Started by seqadmin, 10-17-2024, 07:29 AM
|
0 responses
58 views
0 likes
|
Last Post
by seqadmin
10-17-2024, 07:29 AM
|
Comment