Everything starting with bowtie2 is an executable there. Just move them all into your path.
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But what should I do to move them into the path.
I also installed the Bowtie2 on a linux system. After unzip, the bowtie2 folder contains AUTHORS bowtie2-align-debug bowtie2-inspect example MANUAL.markdown TUTORIAL
bowtie2 bowtie2-build bowtie2-inspect-debug LICENSE NEWS VERSION
bowtie2-align bowtie2-build-debug doc MANUAL scripts
and three subfolers doc, example, and scripts.
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Originally posted by patrickwang View PostBut what should I do to move them into the path.
I also installed the Bowtie2 on a linux system. After unzip, the bowtie2 folder contains AUTHORS bowtie2-align-debug bowtie2-inspect example MANUAL.markdown TUTORIAL
bowtie2 bowtie2-build bowtie2-inspect-debug LICENSE NEWS VERSION
bowtie2-align bowtie2-build-debug doc MANUAL scripts
and three subfolers doc, example, and scripts.
Code:export PATH="$PATH:~/bin"
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Hello! I'm a newbie trying to install bowtie.
I unzipped the source file and then I compiled it
After I tried to add it to my path, I see this message in my shell
"Il comando non può essere localizzato perché "/usr/bin" non è incluso nella variabile d'ambiente PATH".
No command function anymore... what can I do to solve this problem?
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So include /usr/bin in the PATH:
Code:export PATH="$PATH:/usr/bin"
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If you are logged into your user account then you should be able to edit your .bashrc file by using an appropriate text editor such as pico/nano by doing
Code:$ pico ~/.bashrc
Code:$ source ~/.bashrc
Last edited by GenoMax; 08-04-2014, 08:16 AM.
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Thank you so much... my shell now is functional.
Now I have to add bowtie2 to path, which was the cause for the previous problem.
I downloaded -source.zip, unzipped it and then compiled.
However, if I digit "bowtie2", I have this message "command not found".
What's the problem? what I have to do to add bowtie2 to PATH without damage in my system ?
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Bow-tie
Hey Guys,
I am new here. I have a problem to run bow tie on my mac. Here is my command line on terminal: Mds-MacBook-Pro:bioinformatics ZILLURRAHMAN$ cd bow-tie
Mds-MacBook-Pro:bow-tie ZILLURRAHMAN$ ls
2012_Lab_Exercise_2.doc
CGRL - Installing and Using Bowtie.webarchive
How to install Bowtie - SEQanswers.webarchive
Installation and use of Bowtie | Bioinformatics at Viikki campus.webarchive
Trinity (runs local) | Applied Bioinformatics Journal Club.webarchive
bowtie2-2.2.3
ernestturro_mappingpractical.pdf
Mds-MacBook-Pro:bow-tie ZILLURRAHMAN$ cd bowtie2-2.2.3
Mds-MacBook-Pro:bowtie2-2.2.3 ZILLURRAHMAN$ make
Then it showed an error message like this:
Agreeing to the Xcode/iOS license requires admin privileges, please re-run as root via sudo.
What should I do now?
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