Thank you very much. I am a neophyte here and making mistakes in my every steps but you are always helping me. Its amazing for me. Thank you so much. However I have got my terminal back. I had to type
/bin/echo 'export PATH=${PATH}:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/opt/X11/bin' >> ~/.bash_profile then hit enter. Now its working
But now my bowtie2 command is not working. Should I create path using vi editor?
Mds-MacBook-Pro:desktop ZILLURRAHMAN$ type ls
ls is hashed (/bin/ls)
Mds-MacBook-Pro:desktop ZILLURRAHMAN$ type bowtie2
-bash: type: bowtie2: not found
Mds-MacBook-Pro:desktop ZILLURRAHMAN$
Should I create path using vi editor?
Mds-MacBook-Pro:desktop ZILLURRAHMAN$ cd bioinformatics/bow-tie/bowtie2-2.2.3/
Mds-MacBook-Pro:bowtie2-2.2.3 ZILLURRAHMAN$ ls
AUTHORS bowtie2-align-l-debug bowtie2-inspect
LICENSE bowtie2-align-s bowtie2-inspect-l
MANUAL bowtie2-align-s-debug bowtie2-inspect-l-debug
MANUAL.markdown bowtie2-build bowtie2-inspect-s
NEWS bowtie2-build-l bowtie2-inspect-s-debug
TUTORIAL bowtie2-build-l-debug doc
VERSION bowtie2-build-s example
bowtie2 bowtie2-build-s-debug scripts
bowtie2-align-l bowtie2-buildc
Mds-MacBook-Pro:bowtie2-2.2.3 ZILLURRAHMAN$ pwd
/Users/ZILLURRAHMAN/desktop/bioinformatics/bow-tie/bowtie2-2.2.3
Mds-MacBook-Pro:bowtie2-2.2.3 ZILLURRAHMAN$
Should I type:
export PATH="/Users/ZILLURRAHMAN/Desktop/Bioinformatics/Bow-tie/bowtie2-2.2.3/:$PATH"
then save and quit the vi editor? I am asking you mentioning my details files and folders cause I don't another mess. Hope you understand my situation here.
Best Regards
Zillur
/bin/echo 'export PATH=${PATH}:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/opt/X11/bin' >> ~/.bash_profile then hit enter. Now its working
But now my bowtie2 command is not working. Should I create path using vi editor?
Mds-MacBook-Pro:desktop ZILLURRAHMAN$ type ls
ls is hashed (/bin/ls)
Mds-MacBook-Pro:desktop ZILLURRAHMAN$ type bowtie2
-bash: type: bowtie2: not found
Mds-MacBook-Pro:desktop ZILLURRAHMAN$
Should I create path using vi editor?
Mds-MacBook-Pro:desktop ZILLURRAHMAN$ cd bioinformatics/bow-tie/bowtie2-2.2.3/
Mds-MacBook-Pro:bowtie2-2.2.3 ZILLURRAHMAN$ ls
AUTHORS bowtie2-align-l-debug bowtie2-inspect
LICENSE bowtie2-align-s bowtie2-inspect-l
MANUAL bowtie2-align-s-debug bowtie2-inspect-l-debug
MANUAL.markdown bowtie2-build bowtie2-inspect-s
NEWS bowtie2-build-l bowtie2-inspect-s-debug
TUTORIAL bowtie2-build-l-debug doc
VERSION bowtie2-build-s example
bowtie2 bowtie2-build-s-debug scripts
bowtie2-align-l bowtie2-buildc
Mds-MacBook-Pro:bowtie2-2.2.3 ZILLURRAHMAN$ pwd
/Users/ZILLURRAHMAN/desktop/bioinformatics/bow-tie/bowtie2-2.2.3
Mds-MacBook-Pro:bowtie2-2.2.3 ZILLURRAHMAN$
Should I type:
export PATH="/Users/ZILLURRAHMAN/Desktop/Bioinformatics/Bow-tie/bowtie2-2.2.3/:$PATH"
then save and quit the vi editor? I am asking you mentioning my details files and folders cause I don't another mess. Hope you understand my situation here.
Best Regards
Zillur
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