Originally posted by fadista
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There are tools in BFAST (https://secure.genome.ucla.edu/index.php/BFAST) in the "butil" directory to solve exactly the problem described above. They include "bindexhist" and "bindexdist", which are documented in the accompanying reference manual. -
alignable portion of a genome
Hi,
I would like to know of a good and fast way that could help me calculate the alignable portion of a genome (not human), given a reference sequence.
When I say alignable portion I mean that I want to know all the positions of the genome that can be covered uniquely by reads of 36 bp and up to 2 mismatches.
Best regards,
João
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