Hi,
I am trying to compile the source code of BFAST and I am getting the below error message when trying to "make". Appreciate any advice on the error message.
* I use "./configure" before "make".
Thanks
=====================
make all-recursive
make[1]: Entering directory `/hadoop/bfast-files’
Making all in bfast
make[2]: Entering directory `/hadoop/bfast-files’
gcc -Wall -g -O2 -pthread -o bfast AlignedEnd.o AlignedEntry.o AlignedRead.o AlignedReadConvert.o BError.o BLib.o RGBinary.o RGIndex.o RGIndexAccuracy.o RGIndexExons.o RGIndexLayout.o RGMatch.o RGMatches.o RGRanges.o RGReads.o ScoringMatrix.o Align.o AlignNTSpace.o AlignColorSpace.o AlignMatrix.o MatchesReadInputFiles.o RunMatch.o RunLocalAlign.o RunPostProcess.o RunAlign.o BfastFasta2BRG.o BfastIndex.o BfastMatch.o BfastLocalAlign.o BfastPostProcess.o BfastBAFConvert.o BfastHeader.o BfastBMFConvert.o BfastBRG2Fasta.o BfastAlign.o aflib.o Main.o -lm -lbz2 -lz
AlignedEnd.o: file not recognized: File format not recognized
collect2: ld returned 1 exit status
make[2]: *** [bfast] Error 1
make[2]: Leaving directory `/hadoop/bfast-files’
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/hadoop/bfast-files’
make: *** [all] Error 2
I am trying to compile the source code of BFAST and I am getting the below error message when trying to "make". Appreciate any advice on the error message.
* I use "./configure" before "make".
Thanks
=====================
make all-recursive
make[1]: Entering directory `/hadoop/bfast-files’
Making all in bfast
make[2]: Entering directory `/hadoop/bfast-files’
gcc -Wall -g -O2 -pthread -o bfast AlignedEnd.o AlignedEntry.o AlignedRead.o AlignedReadConvert.o BError.o BLib.o RGBinary.o RGIndex.o RGIndexAccuracy.o RGIndexExons.o RGIndexLayout.o RGMatch.o RGMatches.o RGRanges.o RGReads.o ScoringMatrix.o Align.o AlignNTSpace.o AlignColorSpace.o AlignMatrix.o MatchesReadInputFiles.o RunMatch.o RunLocalAlign.o RunPostProcess.o RunAlign.o BfastFasta2BRG.o BfastIndex.o BfastMatch.o BfastLocalAlign.o BfastPostProcess.o BfastBAFConvert.o BfastHeader.o BfastBMFConvert.o BfastBRG2Fasta.o BfastAlign.o aflib.o Main.o -lm -lbz2 -lz
AlignedEnd.o: file not recognized: File format not recognized
collect2: ld returned 1 exit status
make[2]: *** [bfast] Error 1
make[2]: Leaving directory `/hadoop/bfast-files’
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/hadoop/bfast-files’
make: *** [all] Error 2
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