Hello everybody!
I have a little problem with the hmmer.
First of all I downloaded a database which contains multiple protein alignments in a lot of separate multi fasta files. Now I want to use the hmmer’s hmmbuild tool to make HMM profile from these alignments and in the end I want to compere my own protein dataset to these profiles with the hmmschen tool.
Now my problem is that I don’t know how can I convert all of these fasta files to HMM profiles in on step. I can do separately but because I have a lot of fasta files this approach is impossible.
Have somebody got a good tip?
Thanks for all helps.
I have a little problem with the hmmer.
First of all I downloaded a database which contains multiple protein alignments in a lot of separate multi fasta files. Now I want to use the hmmer’s hmmbuild tool to make HMM profile from these alignments and in the end I want to compere my own protein dataset to these profiles with the hmmschen tool.
Now my problem is that I don’t know how can I convert all of these fasta files to HMM profiles in on step. I can do separately but because I have a lot of fasta files this approach is impossible.
Have somebody got a good tip?
Thanks for all helps.
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