We are trying to extract the event data from the set of Ecoli_R73 fast5 files using poretools. However, we are just getting the headers as given below..
>>poretools events ./downloads/LomanLabz_PC_Ecoli_K12_R7.3_2549_1_ch101_file3_strand.fast5
file strand mean start stdv length model_state model_level move p_model_state mp_model_state p_mp_model_state p_A p_Cp_G p_T raw_index
However we are able to successfully extract the event data from the Ecoli_R7_ONI fast5 files, shown below:
poretools events ./Ecoli_R7_ONI/flowcell_17/downloads/LomanLabz_PC_E.coli_MG1655_ONI_3058_1_ch1_file1_strand.fast5 | head -3
file strand mean start stdv length model_state model_level move p_model_state mp_model_state p_mp_model_state p_A p_Cp_G p_T raw_index
./Ecoli_R7_ONI/flowcell_17/downloads/LomanLabz_PC_E.coli_MG1655_ONI_3058_1_ch1_file1_strand.fast5 template54.3698260498 331.3562 1.5353363425 0.024 GGCG37.863502675 0 0.075828027313 GGCGA 0.0758280273130.172070730977 0.545313058662 0.264264061435 3.87242579997e-05 0
./Ecoli_R7_ONI/flowcell_17/downloads/LomanLabz_PC_E.coli_MG1655_ONI_3058_1_ch1_file1_strand.fast5 template54.7938415527 331.3802 1.28566063043 0.0124 GCGA36.7564960183 1 0.172004295914 GCGAT 0.1720042959140.450411898661 0.110056278207 0.435236090772 0.000106594134058 1
Why is this happening?
Thanks!
>>poretools events ./downloads/LomanLabz_PC_Ecoli_K12_R7.3_2549_1_ch101_file3_strand.fast5
file strand mean start stdv length model_state model_level move p_model_state mp_model_state p_mp_model_state p_A p_Cp_G p_T raw_index
However we are able to successfully extract the event data from the Ecoli_R7_ONI fast5 files, shown below:
poretools events ./Ecoli_R7_ONI/flowcell_17/downloads/LomanLabz_PC_E.coli_MG1655_ONI_3058_1_ch1_file1_strand.fast5 | head -3
file strand mean start stdv length model_state model_level move p_model_state mp_model_state p_mp_model_state p_A p_Cp_G p_T raw_index
./Ecoli_R7_ONI/flowcell_17/downloads/LomanLabz_PC_E.coli_MG1655_ONI_3058_1_ch1_file1_strand.fast5 template54.3698260498 331.3562 1.5353363425 0.024 GGCG37.863502675 0 0.075828027313 GGCGA 0.0758280273130.172070730977 0.545313058662 0.264264061435 3.87242579997e-05 0
./Ecoli_R7_ONI/flowcell_17/downloads/LomanLabz_PC_E.coli_MG1655_ONI_3058_1_ch1_file1_strand.fast5 template54.7938415527 331.3802 1.28566063043 0.0124 GCGA36.7564960183 1 0.172004295914 GCGAT 0.1720042959140.450411898661 0.110056278207 0.435236090772 0.000106594134058 1
Why is this happening?
Thanks!
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