Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
Collapse
 
  • Page of 1
  • Filter
  • Time
  • Show
Clear All
new posts
Previous template Next
  • #1

    KaKs calculator

    Hi,

    I am very new to KaKs calculator. I am working on transcriptome study usign 3 species. I have my orthologs and i have successfully got codon-alignment for all orthologs (3 species) in AXT format. My only concern is if KaKs calculator can be used for 3 species, or it just works for 2 species. Based on some lit. search i can see everywhere its mentioned pair-wise comparison, so i am a bit confused. Please help
    Tags: None
  • #2
    Ka/Ks calculation is a pair-wise comparison. It can be used for 2 purposes: 1) Comparison of orthologs between 2 different species; 2) Comparison of paralogs within a species to study duplications/whole genome duplications.

    Comment

    Previous template Next

    Latest Articles

    Collapse
    • seqadmin
      Latest Developments in Precision Medicine
      by seqadmin



      Technological advances have led to drastic improvements in the field of precision medicine, enabling more personalized approaches to treatment. This article explores four leading groups that are overcoming many of the challenges of genomic profiling and precision medicine through their innovative platforms and technologies.

      Somatic Genomics
      “We have such a tremendous amount of genetic diversity that exists within each of us, and not just between us as individuals,”...
      05-24-2024, 01:16 PM
    • seqadmin
      Recent Advances in Sequencing Analysis Tools
      by seqadmin


      The sequencing world is rapidly changing due to declining costs, enhanced accuracies, and the advent of newer, cutting-edge instruments. Equally important to these developments are improvements in sequencing analysis, a process that converts vast amounts of raw data into a comprehensible and meaningful form. This complex task requires expertise and the right analysis tools. In this article, we highlight the progress and innovation in sequencing analysis by reviewing several of the...
      05-06-2024, 07:48 AM
    View All

    ad_right_rmr

    Collapse

    News

    Collapse
    Topics Statistics Last Post
    New Toolkit Enhances Plant Mitochondrial Genome Research by seqadmin
    Started by seqadmin, 05-24-2024, 07:15 AM
    0 responses
    195 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    05-24-2024, 07:15 AM  
    Catalog of Gene-Isoform Variation in Developing Human Brain by seqadmin
    Started by seqadmin, 05-23-2024, 10:28 AM
    0 responses
    217 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    05-23-2024, 10:28 AM  
    Ancient Viral Sequences in Human Brain Linked to Psychiatric Disorders by seqadmin
    Started by seqadmin, 05-23-2024, 07:35 AM
    0 responses
    218 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    05-23-2024, 07:35 AM  
    New Milestone for COSMIC with Extensive Cancer Mutation Data by seqadmin
    Started by seqadmin, 05-22-2024, 02:06 PM
    0 responses
    12 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    05-22-2024, 02:06 PM  
    View All
    Working...
    X