Tweet
I have a problem running Blast nt database against my query sequences(fungal assembly). I noticed that BLAST is skipping some of the queries i.e contigs from the assembly. Can anyone please help? How can I make Blast to process all queries? Is it something to do with the CPU time limit? I even tried splitting my assembly file into smaller parts and submit each part separately. It still skips some contigs from the smaller parts too.*
-
-
Are you referring to online blast? Please read about the new default blast limits in place: https://www.biostars.org/p/444732/ You would need to change the e-value most likely. -
No, I am running blast remotely on a computer cluster. Thanks for that valuable information! I changed e-value and blast skips less queries now.Originally posted by GenoMax View PostComment
-
Technological advances have led to drastic improvements in the field of precision medicine, enabling more personalized approaches to treatment. This article explores four leading groups that are overcoming many of the challenges of genomic profiling and precision medicine through their innovative platforms and technologies.
Somatic Genomics
“We have such a tremendous amount of genetic diversity that exists within each of us, and not just between us as individuals,”...05-24-2024, 01:16 PM -
The sequencing world is rapidly changing due to declining costs, enhanced accuracies, and the advent of newer, cutting-edge instruments. Equally important to these developments are improvements in sequencing analysis, a process that converts vast amounts of raw data into a comprehensible and meaningful form. This complex task requires expertise and the right analysis tools. In this article, we highlight the progress and innovation in sequencing analysis by reviewing several of the...05-06-2024, 07:48 AM
Comment