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Hi all,
I am attempting to determine the number of reads associated with each blast hit, and I am wondering if anyone has a resource that could explain how to do this? My goal is to present my data in a way that shows the number of reads from different taxa (e.g., virus families). I know that it might involve mapping back the sequence to my contig (I think?) but usure how I would do this. I am using CLC, and this is from RNA-Seq!
I am attempting to determine the number of reads associated with each blast hit, and I am wondering if anyone has a resource that could explain how to do this? My goal is to present my data in a way that shows the number of reads from different taxa (e.g., virus families). I know that it might involve mapping back the sequence to my contig (I think?) but usure how I would do this. I am using CLC, and this is from RNA-Seq!