Hi people. I am having a problem with bwa. I am trying to align fastq file to a reference genome. I've also indexed the reference genome. I went to the directory where my fastq files are and when I " bwa aln reference_genome.fna my_file.fastq" i got the following warning.
[bwa_seq_open] fail to open file my_file.fastq : No such file or directory
The file is in the directory, it exist for true and I am seeing it there, and I am calling it from the correct path.
What's the problem, could you guys give an answer?
[bwa_seq_open] fail to open file my_file.fastq : No such file or directory
The file is in the directory, it exist for true and I am seeing it there, and I am calling it from the correct path.
What's the problem, could you guys give an answer?
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