Hello all fridens,
I'm running velvet to assemble a data set of 454 reads. I used the velvetoptimiser.pl for the work. I found that velvetoptimiser tests several hash values and only keeps the best results. In my case, it stopped at kmer = 31. However, when I checked the results, I found that the contigs.fa file dosen't contain any data? Can anyone tell me what is the reason? Thank.
Gordon
I'm running velvet to assemble a data set of 454 reads. I used the velvetoptimiser.pl for the work. I found that velvetoptimiser tests several hash values and only keeps the best results. In my case, it stopped at kmer = 31. However, when I checked the results, I found that the contigs.fa file dosen't contain any data? Can anyone tell me what is the reason? Thank.
Gordon