Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Consed keyboard error

    Hi, my name is Alexandre Bueno. I installed consed ( from phredPhrap package) on two machines. One of them is an old pc and the other is a notebook. Both machines have Xubuntu 18.04 64bit installed in them. The consed version running on the computers is 20.0. the executable of consed is consedlinux64bit_static. After running phredPhrap succesfully, I execute the consed program. The main window of the software opens up. Unfortunetely when I try, file > export consensus with options, it's not possible to type any digits in the field.None of any keyboard's input are recognized by the software and the fields remain blank. I am also sending an image of the problem.The problem happened in both machines. I need help fixing this .Thank you in advance.
    Attached Files

  • #2
    Hi! In your screenshot, isn't "whole" selected?

    Comment


    • #3
      Hi. Thank you for your reply. At that screen whole is not selected. The problem still persists in another screen. If I try to save the assembly ( the whole ), I even can't write a name for it, because keyboard inputs have no effect at all. I am still trying to figure it out and any help is welcome.

      Comment


      • #4
        I'd love to help more (a fellow researcher from Brazil!), but one needs to fill an application form to get the software and apparently it might take up to 2 weeks for the approval? I've never seen something like that, honestly. Is it so astoundingly good?
        Anyways - I'd e-mail the author at this point. When you execute it from terminal, do you get any error while you work on it?

        Comment


        • #5
          Thank you for your time trying to help me. Indeed your question about the terminal message error helped me a lot. The error message at terminal said : Warning: translation table syntax error: Unknown keysym name: osfActivate . I googled it an find out that consed 20.0 was built based on XKEYSYMDB. This file used to be at /usr/share/X11/XKeysymDB on the OS available when consed 20.0 was built, but is deprecated on newer ubuntu based system. This made all inputs from the keyboard non effective in the software. I manage to solve the problem following this tutorial https://magmasource.caltech.edu/foru...hp?topic=142.0 . If the page is no longer available if someone runs true it in the future, just http://goo.gl/bFu6t. and download the file. Then execute this

          tar xvfz XKeysymDB.tar.gz
          sudo chown root:root XKeysymDB
          sudo chmod 644 XKeysymDB
          sudo mv XKeysymDB /usr/share/X11

          Problem solved. Thank you a lot.

          Comment


          • #6
            Hi, I'm glad you could figure it out! Cheers!

            Comment

            Latest Articles

            Collapse

            • seqadmin
              Recent Advances in Sequencing Analysis Tools
              by seqadmin


              The sequencing world is rapidly changing due to declining costs, enhanced accuracies, and the advent of newer, cutting-edge instruments. Equally important to these developments are improvements in sequencing analysis, a process that converts vast amounts of raw data into a comprehensible and meaningful form. This complex task requires expertise and the right analysis tools. In this article, we highlight the progress and innovation in sequencing analysis by reviewing several of the...
              Today, 07:48 AM
            • seqadmin
              Essential Discoveries and Tools in Epitranscriptomics
              by seqadmin




              The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
              04-22-2024, 07:01 AM

            ad_right_rmr

            Collapse

            News

            Collapse

            Topics Statistics Last Post
            Started by seqadmin, Today, 07:17 AM
            0 responses
            3 views
            0 likes
            Last Post seqadmin  
            Started by seqadmin, 05-02-2024, 08:06 AM
            0 responses
            19 views
            0 likes
            Last Post seqadmin  
            Started by seqadmin, 04-30-2024, 12:17 PM
            0 responses
            20 views
            0 likes
            Last Post seqadmin  
            Started by seqadmin, 04-29-2024, 10:49 AM
            0 responses
            28 views
            0 likes
            Last Post seqadmin  
            Working...
            X