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Related Articles MochiView: versatile software for genome browsing and DNA motif analysis.
BMC Biol. 2010 Apr 21;8(1):49
Authors: Homann OR, Johnson AD
ABSTRACT: BACKGROUND: As high-throughput technologies rapidly generate genome-scale data, it becomes increasingly important to visually integrate these data so that specific hypotheses can be formulated and tested. RESULTS: We present MochiView, a platform-independent Java software that integrates browsing of genomic sequences, features, and data with DNA motif visualization and analysis in a visually-appealing and user-friendly application. CONCLUSIONS: While highly versatile, the software is particularly useful for organizing, exploring, and analyzing large genomic data sets, such as those from deep RNA sequencing, chromatin immunoprecipitation experiments (ChIP-Seq and ChIP-Chip), and transcriptional profiling. MochiView provides an extensive suite of utilities to identify and to explore connections between these data sets and short sequence motifs present in DNA or RNA.
PMID: 20409324 [PubMed - as supplied by publisher]
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Related Articles MochiView: versatile software for genome browsing and DNA motif analysis.BMC Biol. 2010 Apr 21;8(1):49
Authors: Homann OR, Johnson AD
ABSTRACT: BACKGROUND: As high-throughput technologies rapidly generate genome-scale data, it becomes increasingly important to visually integrate these data so that specific hypotheses can be formulated and tested. RESULTS: We present MochiView, a platform-independent Java software that integrates browsing of genomic sequences, features, and data with DNA motif visualization and analysis in a visually-appealing and user-friendly application. CONCLUSIONS: While highly versatile, the software is particularly useful for organizing, exploring, and analyzing large genomic data sets, such as those from deep RNA sequencing, chromatin immunoprecipitation experiments (ChIP-Seq and ChIP-Chip), and transcriptional profiling. MochiView provides an extensive suite of utilities to identify and to explore connections between these data sets and short sequence motifs present in DNA or RNA.
PMID: 20409324 [PubMed - as supplied by publisher]
More...