The Repositive platform (https://repositive.io/?SEQanswers) is an online portal and community of users that facilitates finding, accessing, and sharing of published genomic data.
You can find all of my Corpasome family data, including 23andMe, exomes and VCF files using the Repositive platform.
Seqanswers Leaderboard Ad
Collapse
Announcement
Collapse
No announcement yet.
X
-
Information on exome data sharing
At his blog, Georgia Institute of Technology's Jung Choi is sharing his exome data from 23andMe. Choi spares no detail, discussing the specifics about how his data arrived, as well as what all that information looked like when he unpackaged the once-encrypted files. And there was plenty of information:
Given over 100,000 total variants, which should I look at first? Which of these are most likely to influence my health or appearance or behavior? Which of these have the most impact on me being me?
Choi says that his data indicate that about 15 percent of his predicted exome variants are rare or unique. "As more exomes and whole genomes are sequenced, the proportion of 'unique' variants will diminish, but the 15 percent proportion of rare variants is unlikely to shift significantly," he adds.
About jchoigt
I'm an Associate Professor in the School of Biology at Georgia Tech, and Faculty Coordinator of the Professional MS Bioinformatics degree program.
Link to site:
About 5 months after I sent my saliva to 23andMe, I received an email that my exome results were ready. The data were in a large (4.2 GB) encrypted file folder, that could be opened only after I ha…
From: Wayne Kauffman at Rootsweb
Subject: [DNA] Exome mining source - y-SNPs
Date: Mon, 9 Jul 2012 16:13:46 -0700 (PDT)
For those interested in mining Exome results for new y-SNPs take a look at the data contained on
There should be about 88,710 y-bases covered in the results for the male samples. Even if they were sequenced as part of the 1000 genomes project the additional coverage may be useful for identifying SNPs.
We should see a couple of additional 23andMe y-chromosome BAM files go public this week. Will my 2+ novel y-SNPs remain unique as these other sources are mined?Tags: None
Latest Articles
Collapse
-
by seqadmin
The complexity of cancer is clearly demonstrated in the diverse ecosystem of the tumor microenvironment (TME). The TME is made up of numerous cell types and its development begins with the changes that happen during oncogenesis. “Genomic mutations, copy number changes, epigenetic alterations, and alternative gene expression occur to varying degrees within the affected tumor cells,” explained Andrea O’Hara, Ph.D., Strategic Technical Specialist at Azenta. “As...-
Channel: Articles
07-08-2024, 03:19 PM -
ad_right_rmr
Collapse
News
Collapse
Topics | Statistics | Last Post | ||
---|---|---|---|---|
Started by seqadmin, Yesterday, 06:46 AM
|
0 responses
9 views
0 likes
|
Last Post
by seqadmin
Yesterday, 06:46 AM
|
||
Started by seqadmin, 07-24-2024, 11:09 AM
|
0 responses
26 views
0 likes
|
Last Post
by seqadmin
07-24-2024, 11:09 AM
|
||
Started by seqadmin, 07-19-2024, 07:20 AM
|
0 responses
160 views
0 likes
|
Last Post
by seqadmin
07-19-2024, 07:20 AM
|
||
Started by seqadmin, 07-16-2024, 05:49 AM
|
0 responses
127 views
0 likes
|
Last Post
by seqadmin
07-16-2024, 05:49 AM
|
Leave a comment: