YTree 1200 Sardinian samples from Paolo Francalacci's article
This is some very exciting news that I was lucky enough to be involved in a small way. Many new samples from Paolo Francalacci's paper are being added to the YFull tree. More information and comments can be seen at the Yfull Facebook page. I would like to thank Paolo and Vadim for their efforts in this endeavor. I hope this is the beginning of academic data being brought into a public forum for all to see. Current Technical requirements: .FASTQ or .BAM file; coverage min 25X; read length min 100 bp for determining age estimations. Currently the YTree at YFull is at revision 3.17.
Vadim Urasin YFull Principle
17 hrs · Edited
"We started to add in our YTree 1200 Sardinian samples from Paolo Francalacci's article http://www.ncbi.nlm.nih.gov/pubmed/23908240 Kerry O'Dair thank you for help with first communication with Paolo. At first we will add 49 samples. They have ids 4399-4401, 4411, 4416, 4592-4632 (numbers of 3 samples indefined yet). Later we create special page with list of samples anf their subclades and we will change way to show them in our YTree and add reference to Paolo's article.
Unfortunately we can not add these samples in any group for reason of keeping privacy. Also we will not use these sample for age estimation because of their low quality. But you will see changes in our YTree. I think we will define many new subclades. Each batch we plan to add about 60 Sardinian samples.
We don't promise to add all of 1200 samples but we will add many of them."
Breakdown of subclades in study:
This is some very exciting news that I was lucky enough to be involved in a small way. Many new samples from Paolo Francalacci's paper are being added to the YFull tree. More information and comments can be seen at the Yfull Facebook page. I would like to thank Paolo and Vadim for their efforts in this endeavor. I hope this is the beginning of academic data being brought into a public forum for all to see. Current Technical requirements: .FASTQ or .BAM file; coverage min 25X; read length min 100 bp for determining age estimations. Currently the YTree at YFull is at revision 3.17.
Vadim Urasin YFull Principle
17 hrs · Edited
"We started to add in our YTree 1200 Sardinian samples from Paolo Francalacci's article http://www.ncbi.nlm.nih.gov/pubmed/23908240 Kerry O'Dair thank you for help with first communication with Paolo. At first we will add 49 samples. They have ids 4399-4401, 4411, 4416, 4592-4632 (numbers of 3 samples indefined yet). Later we create special page with list of samples anf their subclades and we will change way to show them in our YTree and add reference to Paolo's article.
Unfortunately we can not add these samples in any group for reason of keeping privacy. Also we will not use these sample for age estimation because of their low quality. But you will see changes in our YTree. I think we will define many new subclades. Each batch we plan to add about 60 Sardinian samples.
We don't promise to add all of 1200 samples but we will add many of them."
Breakdown of subclades in study:
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