Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Lotsa new toys from Illumina: HiSeq X Five, 3000, 4000, NextSeq 550

    Hiseq 4000
    Hiseq 3000
    Nextseq 550
    HiseqX 5

    http://www.illumina.com/company/news...newsid=2006979

  • #2
    Any idea if the HS4000/5000 are using 4-color or 2-color chemistry?

    Comment


    • #3
      I think that's Nextseq only?
      Looks to me like they've just stuck HiseqX-style flowcells in the 2500 system.

      Comment


      • #4
        Except that I'm pretty sure the X-series do use 2-dye chemistry, the same as NextSeq...

        Comment


        • #5
          Originally posted by GW_OK View Post
          I think that's Nextseq only?
          Looks to me like they've just stuck HiseqX-style flowcells in the 2500 system.
          Possible upgrade path for current 2500 owners?

          I am not going to hold my breath though.

          Comment


          • #6
            Originally posted by Brian Bushnell View Post
            Except that I'm pretty sure the X-series do use 2-dye chemistry, the same as NextSeq...
            Can't find any literature that says anything other than the Nextseq uses 2 colors. In fact, isn't this why the Nextseq currently has GC problems? Haven't heard anything about that with the HiseqX...

            Comment


            • #7
              Originally posted by GenoMax View Post
              Possible upgrade path for current 2500 owners?

              I am not going to hold my breath though.

              LOL, just like I was able to upgrade my v2-camera 2500's for the v4 chemistry....

              Comment


              • #8
                New toys for one person is a funding/migration headache for another. Especially if there is no upgrade path. :-(

                Comment


                • #9
                  Made the title more explicit and promoted to the front page...

                  Comment


                  • #10
                    This http://blog.illumina.com/blog/illumi...eq-4000-system says the 4000 uses 4-color.

                    This http://www.illumina.com/content/dam/...0-2014-057.pdf says that 1 flowcell does 50 transcriptomes per run at 50M reads each, so that is >300M reads per lane. Looks faster as well, if the longest run time is 3.5 days (not sure if that would be for 1x150bp or 2x150bp).
                    Providing nextRAD genotyping and PacBio sequencing services. http://snpsaurus.com

                    Comment


                    • #11
                      There are data from PCR-free, RNA-Seq and NRC libraries sequenced on HiSeq 4000 in BaseSpace.

                      Comment


                      • #12
                        Heard from someone that the cluster and reagent kits are similar in price to current Hiseq 2000 reagents, which would mean the price per read is quite a bit lower.
                        Providing nextRAD genotyping and PacBio sequencing services. http://snpsaurus.com

                        Comment


                        • #13
                          #SNPsaurus:
                          I assume it will be 2x 150 bp in 3.5 days.
                          2.1 to 2.5 billion clusters per flow cell, in a 2x150 bp run is 630 - 750 Gb.
                          With a speed >200Gb per day a 2x 150 bp run will take 3.5 days.

                          I wonder if we can upgrade the 2500 V4 machine to a 4000 version...

                          Comment


                          • #14
                            It looks to me that the 3000/4000 only accept 8 lane flow cells (high-output). If true then the trade off for throughput is flexibility.

                            Comment


                            • #15
                              Originally posted by GenoMax View Post
                              Possible upgrade path for current 2500 owners?

                              I am not going to hold my breath though.
                              Ditto. I think supporting the patterned flow-cells would require too much of a reworking of the guts...

                              Seems like they are following the Apple product release model...

                              Comment

                              Latest Articles

                              Collapse

                              • seqadmin
                                Best Practices for Single-Cell Sequencing Analysis
                                by seqadmin



                                While isolating and preparing single cells for sequencing was historically the bottleneck, recent technological advancements have shifted the challenge to data analysis. This highlights the rapidly evolving nature of single-cell sequencing. The inherent complexity of single-cell analysis has intensified with the surge in data volume and the incorporation of diverse and more complex datasets. This article explores the challenges in analysis, examines common pitfalls, offers...
                                06-06-2024, 07:15 AM
                              • seqadmin
                                Latest Developments in Precision Medicine
                                by seqadmin



                                Technological advances have led to drastic improvements in the field of precision medicine, enabling more personalized approaches to treatment. This article explores four leading groups that are overcoming many of the challenges of genomic profiling and precision medicine through their innovative platforms and technologies.

                                Somatic Genomics
                                “We have such a tremendous amount of genetic diversity that exists within each of us, and not just between us as individuals,”...
                                05-24-2024, 01:16 PM

                              ad_right_rmr

                              Collapse

                              News

                              Collapse

                              Topics Statistics Last Post
                              Started by seqadmin, Yesterday, 07:49 AM
                              0 responses
                              14 views
                              0 likes
                              Last Post seqadmin  
                              Started by seqadmin, 06-20-2024, 07:23 AM
                              0 responses
                              14 views
                              0 likes
                              Last Post seqadmin  
                              Started by seqadmin, 06-17-2024, 06:54 AM
                              0 responses
                              16 views
                              0 likes
                              Last Post seqadmin  
                              Started by seqadmin, 06-14-2024, 07:24 AM
                              0 responses
                              25 views
                              0 likes
                              Last Post seqadmin  
                              Working...
                              X