In my case SRR1284074, if use
#fastq-dump SRR1284074
Rejected 163480 SPOTS because SPOTLEN < 1
Read 163482 spots for SRR1284074
Written 2 spots for SRR1284074
Use "--table SEQUENCE" to dump SRR1284074, I still got 3 spots rejected.
#fastq-dump --table SEQUENCE SRR1284074
Rejected 3 SPOTS because SPOTLEN < 1
Read 163482 spots for SRR1284074
Written 163479 spots for SRR1284074
Any more suggestions or comments on this issue are very welcome.
Originally posted by rwan
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