Hi all!
I used samtools to create sam files from bam. Then I sorted sam file with command: sort -s -k 1,1 07pos.sam > 07pos.sorted.sam...
55 results in 0.0024 seconds.
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Problem with HTSeq dexseq_count.py script
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Cufflinks GTF for DEXSeq
I'm trying to use a Cufflinks GTF that includes novel isoforms as an input for DEXSeq. I'm having trouble with the first python script, which I successfully... -
Problem using HTSeq count with SAM file without quality score
Hi everyone,
I have a problem using HTSeq count to analyse my SAM file. I think I know the source of the error and I'm wondering whether... -
HTSeq dealing with "*" qualities
Hi everyone,
I started using HTSeq a couple of days ago and now encountered a problem. Maybe someone knows a workaround.
I am...Last edited by kamsen; 04-04-2012, 07:06 AM. -
htseq count missing last mapped fragment
I am using the program htseq-count v0.5.3 with an standard sam file from the mapping of a set of paired end reads. Comparing this file with the output... -
HTSeq Script from DEXSeq Reports Assertion Fail in SAM file
I am evaluating DEXSeq which uses two Python scripts from HTSeq to prepare for analyses. The second script, dexseq_count.py reports the following error... -
Basic programming question: Very large hash tables
Hi all,
in various applications of RNA-seq analysis I find myself wanting to traverse over all reads in a large fastq file and gather... -
An error in installation of HTSeq with numpy
Hi,
I am trying to install HTSeq and i already checked out if numpy is installed well. but still got an error message that i need... -
Problem using HTSeq
Hi,
I am currently using HTSeq to get raw counts. HTSeq has been installed on our linux cluster and the administrators suggested to use... -
HTSeq: A Python framework to work with high-throughput sequencing data
Hi
I would like to advertise the release of HTSeq, a Python framework to process and analyse high-throughput sequencing (HTS) data....
