Hi,
I've been looking for the PCR regions or 'manifest file' for a whole genome sequencing kit? In an example there hundreds of WGS in...
15 results in 0.0028 seconds.
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Manifest File for Whole Genome Sequencing
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Genome In A Bottle allele freqiencies
Hi,
I downloaded the recent vcf file of NA12878 from the link below and would like to compare the allele frequencies of the published variants... -
ASW from AFR population in 1000 genomes
Hi all,
This may be a very elementary question, but does anyone know how/where I can access the data for just the ASW population that seems... -
consensus sequence with samtools and bcftools 1.2
Hi,
I want to build a consensus sequence for a small region of the genome from an individual in 1000genomes. Here's what I did:
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na12878 ground truth SVs
Hi,
Are there any available ground truth SV sets for the individual na12878 beyond what is presented in additional material of "Mapping... -
1000 genomes raw data should be filtered?
Hi! This is my first question, maybe somebody could help me.
Should I delete adaptor sequences from raw data reads from 1000 genomes?... -
Best place to get .vcf with genotypes for HapMap cell lines?
Hi
I need to obtain SNPs and genotypes for 30 lymphoblastoid cell lines.
I had been told these 30 individuals (CEU and... -
How can I overlay my SNP variants with various databases
Hello,
Has anyone tried to overlay human genomes variants with the 1000G or Hapmap or dbsnp. If so, what are the results like ?
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Select only one sample in 1000 Genomes whole genome VCF
Hi there,
First of all I have to say how incredible is the work people is doing at 1KG project. This post is not to criticize their work,... -
Too many singleton alignments found by bwa
I was using bwa to map the high coverage paired-end sequenced trio data from 1000 genome. I found that singleton alignments (one end map, the other not... -
1000Genomes YRI trio, NCBI36/37, rs334
Hello all!
I was asked to download the data of a trio of YRI from the 1000genomes Project. So I looked at all the data published by the... -
1000genomes Accessibility
Hi all,
I am interested in a particular genomic region that I would like to retrieve from all 1103 mapped genomes that are available today. I... -
tabix and 1000 genomes data
Hi,
I am trying to access the latest release of the 1000 genomes data to check a few snps. In the README file they say:
"Each... -
gaps in consensus built from samtools pileup
Hi,
I am a newbie to NGS data.
I was trying to extract consensus from BAM files of 1000genomedata (namely ftp://ftp-trace.ncbi.ni...Last edited by culmen; 07-21-2010, 09:14 AM. -
small part of all 1000 sequences from 1000genomes data needed?
Hi,
I am a newbie to next-gen data (just working from past couple of days). I am working on 1000genomes data for my thesis work.
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