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bbsplit not using all reads in library
I have RNA-seq files which I am wanting to split based on mapping to reference sequences. I am using bbsplit to map to the sequences and output separate... -
Has anyone used BBTools package to remove contaminants
I would like to remove mitochondrial, chloroplast and rDNA contaminants from read data using BBTools - I was wondering if anyone has used BBTools to do... -
BBSplit assertion error: invalid fasta file
Good morning, BBMappers!
I have been trying to run BBSplit (on my university's computing cluster) to remove host sequences from metatranscriptome...Last edited by GenoMax; 03-21-2019, 11:36 AM. -
BBSplit result statistics
I use bbsplit.sh to run my analysis as following:
...Code:./bbmap/bbsplit.sh in1=R1_001_bc_prefix.fastq.gz in2=R2_001_bc_prefix.fastq.gz ref=hg19.fa,mm10.fa
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Introducing BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit is a tool that bins reads by mapping to multiple references simultaneously, using BBMap. The reads go to the bin of the reference they map to...Last edited by Brian Bushnell; 09-16-2014, 08:29 AM.
