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  • s18692001
    Junior Member
    • Apr 2017
    • 3
    #1

    BBSplit result statistics

    I use bbsplit.sh to run my analysis as following:
    Code:
    ./bbmap/bbsplit.sh in1=R1_001_bc_prefix.fastq.gz  in2=R2_001_bc_prefix.fastq.gz  ref=hg19.fa,mm10.fa  basename=out_%.bam threads=4  ambig2=best
    I want to know the mapping quality of the result. How can I access it?

    Simon
    Tags: bbmap, bbsplit, quality check
    • GenoMax
      Senior Member
      • Feb 2008
      • 7142
      #2
      Cross-posted on Biostars: https://www.biostars.org/p/312084/

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