Hi Everyone!
We work with a lignocellulose-degrading microbial consortia. Within a time-series experiment of an enriched culture, we perform...
17 results in 0.0029 seconds.
-
Question: Metatranscriptome binning
-
Multithread MyCC
Dear SeqAnswers community,
Can someone please tell me how to multithread MyCC? I don't see any options in the documentation. Not sure if... -
Post binning
Are there any binning programme available to do binning just on the basis of coverage and GC % ?
I used SPAdes to generate assembly and...Last edited by sk_minu; 07-31-2016, 12:52 PM. -
Clustering/Binning Metagenomic contigs with MyCC and 16S sequences
I have tried to use MyCC (http://www.nature.com/articles/srep24175) on samples with varied diversity and I always get very good accuracy between number... -
Metagenomic contig binning and 16S with MyCC
I have tried to use MyCC (http://www.nature.com/articles/srep24175) on samples with varied diversity and I always get very good accuracy between number... -
Resolve species/strain in metagenomic bin
Hi all,
I am trying to recover microbial draft genomes from metagenomic contigs.
I have used several assembly and binning... -
shorter contigs after binning and reassembly
Hello friends, maybe you can help me with this.
I have a coassembly of two metagenomes, from which I can retrieve the contigs that belong... -
Blasting contigs against reference database
Apologies if this has been covered elsewhere, couldn't find a satisfactory answer easily....
The problem: I have hi-seq 2500... -
Binning expression data along with capturing gene identifiers
Got the answer from Bioconductor support
Thanks to johannes.rainer
https://support.bioconductor.org/p/64409/#64433
Hello,... -
NORMALIZED tetranucleotides frequency
I want to do a PCA of metagenomic contigs based on tetranucleotide composition. Commonly I read in the literature the use of NORMALIZED tetranucleotide... -
Emergent self-organizing maps from 4mer frequencies (binning metagenomic contigs)
Does anyone here have experience in assembling genomes from metagenomic contigs? I have found that this protocol, which is optimized for AMD datasets,... -
Introducing BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit is a tool that bins reads by mapping to multiple references simultaneously, using BBMap. The reads go to the bin of the reference they map to...Last edited by Brian Bushnell; 09-16-2014, 08:29 AM. -
Code to bin reads that have been mapped
Basicaslly the idea we have is to map our metagenomeic reads to a file containing all isolated genomes from the environment. Then remove the mapped reads... -
Why does UCSC genome browser NOT using spatial index?
UCSC genome browser uses binning strategy to retrieve genes more efficiently than simply creating a B-tree on the start and end coordinates. This certainly... -
Can anyone explain BAM indexing algorithm to me?
I have been trying to understand how the BAM index works by reading the SAM specification (v1.4, the newest version) and even samtools' source code. However,...
