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post de novo assembly reference mapping?
I am curious if there is a program/app that would do post de novo assembly reference mapping--essentially breaking down the full scaffold into chunks...
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Clinical NGS Diagnostics Translating Genomic Data to the Standard of Care
This year’s Ninth Clinical NGS Diagnostics: Translating Genomic Data to the Standard of Care conference is being held in San Francisco, CA from March...
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Create perl program
Hi,
I have two sequence file.I want only the mathching sequences which is present on both files and save that output in third file...Can...
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Genometa-using reference-problems
1. The tutorial of Genometa said that 'After starting Genometa, the locations of the "Metatie-Fastalines" file and the "Lineage Mappings"...
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unique379 started a topic I would like to know basic pipeline for analysis of miRNA from SOLID seq data ?in SOLiDI would like to know basic pipeline for analysis of miRNA from SOLID seq data ?
We have raw data in COLOR space format (.csfasta) and would like to profile and analyze it in order to find known and novel miRNA in sample. Further we...
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Pipeline for Solid data
Hello All,
I would like to ask basic pipeline in order to analysis miRNA data that produces from Solid machine. I am new in this this technology...
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Novel gene annotation
Hi all,
Need your kind suggestions according to your expertise....
We have found a Novel gene during the NGS (next generation...
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After doing Bowtie2 alignment I ended up in less data.
I am having single end sequence data from Illumina and did the mapping using the Bowtie2 default parameters. Then I converted it to bam format from sam...
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acknowledging the seqanswers.com forum
Dear All,
Let me introduce myself as a researcher in biology who uses genomics approaches to solve biological problems and address...
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forward and backward neighbors !!!!
hello,
im new in this site...
what is forward and backward neighbors in de novo sequence assembly?????
now i am working...
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Next Generation Sequencing Conference@RGCB,Trivandrum, Kerala, India. Dec 16, 17 2011
Next-Generation Sequencing and Bioinformatics for Genomics & Healthcare meeting to be held on Dec 16 th & 17 th, 2011 at the Rajiv Gandhi Centre...
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Combining the ChIP-Seq Data
Hi everyone,
I am interested to know if I am allowed to combine the Chip-Seq data from experiments where the sample was same (under same...
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Planning to attend meeting in August, San Francisco
Hi All,
I am planning to attend this conference on Next Generation Sequencing & Genomic Medicine Applications Summit:
Integrating...