Hi all!
I'm currently working with a multi entry genbank file and two dataframes in order to add new qualifiers to the genbank file via...
20 results in 0.0030 seconds.
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Adding Features to a GenBank File - Any Help?
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Parsing HMMER Reads in Biopython
Hello all,
I have obtained HMMER reads on 60 metatranscriptomic sequences, against Pfam, dbCAN2, and MEROPS databases. I ran the protein... -
BLAST taxid to complete linage using biopython on a local machine.
Hello all,
Using BLAST, I am trying to identify thousands of sequences. To make my job a bit easier, I would like to classify these sequences... -
Biopython coding help.
Hello, everybody!! I want to study PPI and for that, I need to classify the Proteins localization. For that, I got output in a text file with "Asterisk"... -
Fastest way to add Ns to variable length sequences to get uniform length
I have a fasta file with a thousand sequences with a distribution of lengths between 100 and 150bp. I would like to add Ns to all sequences whose length... -
Problem with installation of blaSTorage
Hey
I have a problem with installation of blaSTorage on my ubuntu. I have a many results from standalone psiblast and i read that the new... -
Combining fasta file and bed file into a different file using biopython,python
hi, I want to create a file using biopython or python or java .for each bed file range, the particular ATGC sequence need to be retrieved and all the... -
How to Print Statistics from Python filtering script
Hello all,
I have the following python script which will filter paired-end fastq read data based on nucleotide complexity with a user... -
Biopython pdb.DSSP fasta
Hi everyone!
I`ve a trouble with run DSSP module with protein in fasta format. Is it possible to run DSSP from biopython interface with sequence... -
Biopython Translate function
Hi all!
I'm having problems using Biopython to translate sequences into all 3 forward reading frames.
I wrote this script... -
Biopython SeqRecord
Hi everyone
I`ve a trouble with adding letter annotations into my sequence.
I have a Seq object and a string with secondary structure... -
Finding distance from superimposed PDBs
Hi Members,
How do I get distance between pdb atoms of 2 files, after they are super imposed?
...Code:def alignPDB_file(refPDB, samplePDB):
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Analyzing fasta files: BioPython
Hello!!!
I have a file with a list of accession numbers for the organisms of my interest. I also have two other fast files, one with a... -
Grab Only Genes from Trinity Assembly FASTA Output
I'm doing some transcriptome assembly work with Trinity, which outputs a FASTA file full with ID numbers that look something like this: c0000_g1. Only... -
Slicing genbank file using biopython [problem]
Hello, i'd like to slice multiple genbank files using biopython at different location:
slice genome 1 at location 1. I have already coded this...
