Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Problem with installation of blaSTorage

    Hey

    I have a problem with installation of blaSTorage on my ubuntu. I have a many results from standalone psiblast and i read that the new blast writing results in xml and using Biopython for parse many sequences is problematic. So i was looking for something else and found that package http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3571973/
    But the instalation is a problem becouse im not an ace in linux and the instalation file is not tar.gz as author said no more. Its zip. Seriously stupid problem but please, can someone help?

    Or can someone reccomend an alternative way?

    Also Im using Anaconda2.

    Regards
    M

  • #2
    For reference cross-posted: https://www.biostars.org/p/183852/

    Try the option I suggested there.

    Comment


    • #3
      Blastorage

      Hey, thank you for help.
      I didnt know how to install python module (Im truly beginner )

      here what ive do:

      1. unziped this file
      2. in terminal cd to this folder where files was unziped
      3. in terminal typed "python setup install" setup file -> from unziped files
      4. check that module exist for python and can be imported (in my case in spyder, but it doesnt matter. it can be just python interpreter)

      realy light-hearted problem

      Regards

      Comment

      Latest Articles

      Collapse

      • seqadmin
        Advanced Tools Transforming the Field of Cytogenomics
        by seqadmin


        At the intersection of cytogenetics and genomics lies the exciting field of cytogenomics. It focuses on studying chromosomes at a molecular scale, involving techniques that analyze either the whole genome or particular DNA sequences to examine variations in structure and behavior at the chromosomal or subchromosomal level. By integrating cytogenetic techniques with genomic analysis, researchers can effectively investigate chromosomal abnormalities related to diseases, particularly...
        09-26-2023, 06:26 AM
      • seqadmin
        How RNA-Seq is Transforming Cancer Studies
        by seqadmin



        Cancer research has been transformed through numerous molecular techniques, with RNA sequencing (RNA-seq) playing a crucial role in understanding the complexity of the disease. Maša Ivin, Ph.D., Scientific Writer at Lexogen, and Yvonne Goepel Ph.D., Product Manager at Lexogen, remarked that “The high-throughput nature of RNA-seq allows for rapid profiling and deep exploration of the transcriptome.” They emphasized its indispensable role in cancer research, aiding in biomarker...
        09-07-2023, 11:15 PM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by seqadmin, Yesterday, 09:36 AM
      0 responses
      8 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 10-02-2023, 07:14 AM
      0 responses
      15 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 09-29-2023, 09:38 AM
      0 responses
      16 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 09-27-2023, 06:57 AM
      0 responses
      16 views
      0 likes
      Last Post seqadmin  
      Working...
      X