Hi
I found a strange mapping result by Bioscope.
I analyzed the paried end reads from a whole transcriptome, and checked the mapping results....
12 results in 0.0032 seconds.
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Bioscope multi-hits
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IndelRealigner on fragment data
Hi everyone,
I want to locally realign some bam files coming from exome fragment data with the GATK IndelRealigner tool. I have done the... -
Bioscope(diBayes) for SOLiD~need help
Hi,I major in Molecular Bio,and what i am doing now need the SOLiD platform.
But I'm totally a green hand in Bioinfo stuff~ Today I got one... -
Bioscope Ma conversion (to base space)
Hi
Has anybody written a script/c program that converts mapped color space reads to base space reads by using Bioscope's (vs 1.3.1) mapping... -
Bioscope pairing pipeline
Hi
Does anybody know how to correctly use parameters in the BioScope 1.3.1 pairing pipeline?
I wanted to set
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Mysteries of the Bioscope pairing pipeline
Hello to all,
I'm currently trying to extract some reasonable data from the Bioscope pairing tool.
We have paired-end reads... -
.cmap file in Bioscope
Hello all,
I am analyzing a bacterial genome.
I am running the Find Small InDels analysis with Bioscope and it requires the .cmap... -
bioscope ma to bam conversion
Hello
I have got a question related to the ma2bam conversion.
Is it somehow possible the output the raw read sequence and... -
WT mapping alignmentReport oddities.
Can someone kindly explain "Reads mapped, not filtered" in plain english?
ABI's documentation is confusing (put mildly)
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position of errors in solid read
Does anybody know how to determine the positions of errors (in alignments, after mapping reads to a reference) in solid color space reads ?
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BioScope Mapping Multiple csfasta-Files
Hello
Does anybody know how it is possible to map reads from several csfasta files (e.g. different samples on different panels) with the... -
BioScope Mapping Rounds
Hello
I am using BioScope 1.2 mapping pipeline to map SOLiD 50bp (fragment library) reads onto the Human genome.
About 60%...
