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kaps started a topic determining number of reads in a contig using clc genomics work bench

in General

04-22-2015, 01:14 AM
determining number of reads in a contig using clc genomics work bench

Is it to possible to calculate the number of reads in a contig or number of reads mapping back to a contig using CLC genomics workbench? How?

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cement_head started a topic What is the expected number of cDNAs/contigs?

in De novo discovery

07-29-2014, 08:58 AM
What is the expected number of cDNAs/contigs?

Hello,

For a vertebrate, what is the expected number of cDNAs/contigs from a de novo assembly of RNA-Seq data, after the duplicates...

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ripeapple started a topic Trinity contig filtering

in Bioinformatics

10-10-2013, 01:08 PM
Trinity contig filtering

Hello, all,

I have just got my Trinity assembly, the N50 looks good. However, I have 100 contigs length extends from 4000bp to 11700bp....

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NGS_New_User started a topic Soap De Novo assembly interpretation

in Bioinformatics

08-12-2013, 12:59 PM
Soap De Novo assembly interpretation

Hello!

I have run soap de novo on my assembly, and I have used different kmers. I have 12 assemblies and I need to choose the best one...

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