Hello,
I tried to get gene expression level bby using tophat/cufflinks pipeline. I follow the step exactly like the flowchart in this link:...
10 results in 0.0028 seconds.
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Cufflinks problem
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Compiling Cufflinks 2.1.1: Fatal error
Getting tired of "segmentation 11" errors I started compiling Cufflinks on osx maverick.
Im using Boost version 1.47 and everything... -
What precisly does the "cov" attribute in Cufflinks measure?
In Cufflinks analyses of RNA-Seq data, what exactly does the "cov" (coverage) attribute measure?
In the CuffLinks manual, it... -
HPC cluster : make error : make[2]: *** [bundles.o] Error 1
Hi all!
I am having a problem installing cufflinks on a HPC cluster.
Here is what happens before the error comes up when... -
Changes between Cufflinks/Cuffdiff version 2.0.2 and version 2.1.1
Hey All
I have analysed some RNA-Seq data for a mouse genome with both Cufflinks/Cuffdiff version 2.0 and 2.1 and get quite different results.... -
Why does Cufflinks assign a strand to some RNA sequences but not others?
I am analyzing RNASeq data using a Tuxedo pipeline. For the most part, the RNA sequences seem to align with known genes in the correct orientations. ... -
multithreads -p option in cuffdiff
Hi guys,
I was wondering how cuffdiff handles multithreads, basically the -p option.
I'm right now at this step:
"Inspecting... -
Cufflinks: Missing assembly of reads
I am working on the zebrafish genome. I took out two regions of the genome hence called good and tricky
good: chr1 44689765 44728408... -
Cufflinks missing transcript assembly in random genomic loci
Dear All,
I am running Cufflinks on RNAseq data from 2 samples. The parameters I have used for both the samples are
--frag-bias-correct... -
Cufflinks v.2.1.1 on Rocks v.5.3
We have a very specific problem with cufflinks v.2.1.1 on a Rocks cluster (v.5.3). We have been getting segmentation faults with cufflinks v.2.1.* releases....Last edited by GenoMax; 06-04-2013, 10:03 AM.
