In Cufflinks analyses of RNA-Seq data, what exactly does the "cov" (coverage) attribute measure?
In the CuffLinks manual, it states that cov "Estimate[s]... the absolute depth of read coverage across the whole transcript". Does this refer to the average coverage per nucleotide for the transcript in question?
In the CuffLinks manual, it states that cov "Estimate[s]... the absolute depth of read coverage across the whole transcript". Does this refer to the average coverage per nucleotide for the transcript in question?
