hi,
how to do differential expression gene analysis for single cell RNAseq?
I tried DESeq2 and Edger, this two method didn't considered...
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how to do differential expression gene analysis for single cell RNAseq
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Beginner questions on RNA-seq DEG
Currently, I have the following RNA samples and want to see any up/down-regulated gene expression in proband to explain the disease-causing of the proband.... -
Normalization edgeR
Dear all,
I know there are thousands of posts regarding this topic.
HOW one can choose the best normalization method in edgeR??
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Missing values when pulling data from CummeRbund
I'm using CummeRbund to find genes commonly differentially expressed in two conditions vs wild type. I got through to the final list using match(),... -
Best way to compare DEG between de novo pipeline and Cufflinks pipeline
Hi!
I would like to know your opinion about WHAT IS THE BEST WAY to compare DEG ( Differentialy Expressed Genes) between de novo pipeline... -
Cuffdiff - NO TESTED isoform
Hi !
I have one question. Analysing one gene differentially expressed by Cuffdiff, i saw that all of your isoforms are not differentially expressed.... -
Determining the biological process or function of genes
I have a list of DEGs from DESeq from A.digitifera coral. I put them into DAVID software as a list, selected Identifier as "OFFICIAL_GENE_SYMBOL",... -
DEG analysis with paired sample without replication
I have a question regarding to analyze the RNAseq data.
My data is exactly looks like this.(total 12 samples)
disease1 patient1... -
Rpkm deg
Hi Everyone,
I am working on a set of samples (generated using Illumina) for differential gene expression between control and treated samples.... -
HiSeq versus Solid for DGE
Dear All,
this is my first post.
I have to make purchasing decision for a sequencer for the my lab in the next two months.
My need...
