11 results in 0.0021 seconds.
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How to view full error messages in Galaxy
Hi this is a really stupid question. I'm working in Galaxy and getting error messages from Cummerbund, but I can't see the full message to fix it.... -
velvet columbus reference errors
I have seen some posts about using velvet with a reference, but they have not helped me........
I am trying to assemble a plant genome using a... -
problems in samtools install
hello everybody!
i tried installing samtools in Ubuntu (64bit) but failed. here are the error messages:
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Tophat v2.0.4 memory usage
I have a question about memory use by the new version of Tophat (v2.0.4). We ran the previous versions of Tophat on our cluster over 8 threads with 2... -
Error while running GATK UnifiedGenotyper
Hi everyone!
I've been analyzing some illumina whole exome sequencing data these days. yesterday I used GATK(version 2.0) UnifiedGenotyper to call... -
RNA-seq Tophat2 errors
Hi everyone
I'm rather new to this field, so am trying my best and have spent the better part of a day trying to get Tophat2 to work with... -
tophat2 errors
now that we have tophat2 out the door, i'm sure we'll have bunch of tophat2 related error messages and solutions - hopefully.
thank you... -
Problem running BWA sampe
Maybe someone can see what I'm doing wrong here. I'm using BWA to align a dataset and get a SAM file that I can use for variant calling. I've indexed... -
Problems with cuffmerge
0
Hi everyone,
I'm trying to use cuffmerge but I get the following error message:
[Thu Oct... -
sam to bam conversion error, no @SQ lines in the header, missing header?
I have a sam file that I want to convert to a bam file:
samtools view -b -S in.sam > out.bam
I get this error:
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GATK "MAPQ should be 0 for unmapped read" complaint for mapped read
In running UnifiedGenotyper in GATK, I got the following error message:
Exception in thread "main" net.sf.samtools.SAMFormatException:...
