Hi all!
I am looking for a decent course in clinical exome analysis. I would prefer something in Europe and I am not excluding online courses...
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How do you extract regions of interest when you have massive exome data?
Hi everyone,
I am new to bioinformatics and I have been having trouble with exome data. I've practised using standalone BLAST+ and I've...
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Amino Acid Sequence from Exome Data?
Hi Everyone,
I working on a project that requires an amino acid sequence of exome sequence data. My first approach was to use samtool's...
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GATK Based Variant calling STEPS
Hello,
I am working on putting together a workflow for calling variants using Haplotype called in GATK:
The process follow...
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Exome sequencing for homozygous recessive disease
I am naive in the field of genomics. Please guide me through these questions.
If I have exome sequencing data of a family with a homozygous...
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Reading a vcf - genotypes
Hi, I am trying to understand the genotype calls in my vcf, a trio.
Looking at one variant of interest, the calls are:
Dad Mum ...
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Determine ethnicity from exome sequence
I have data from 40 exomes and they are from de-identified post-mortem samples.
There are many SNPs that have a higher frequency in Asian...
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Mutect Analysis Criteria: Judgement Calls
Hello everybody, I am dealing with a dataset of cancer tumours sequenced on hiseq. I do not have a matched normal, and I have used Mutect to call somatic...
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RUbioSeq: a suite of parallelized pipelines for exome variation, CNVs and Bis-Seq
RUbioSeq has been developed to facilitate the primary and secondary analysis of resequencing projects by providing an integrated software suite of parallelized...
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Joint variant calling in trios
Hello,
I have exome sequencing data for a few sets of trios in which the offspring have phenotypically related but probably genetically...
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Illumina Truseq Exome 62Mb - variant metrics?
Hey Everyone,
I'm just curious what kind of variant metrics everyone obtains for the Truseq 62 Mb exome enrichment. I've only processed...
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Exome data: how to filter by cases and controls?
Hi all,
I'm currently trying to figure out how to sort the exome data from several samples so that I would have a list with SNPs/indels...
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Exome Sequencing data
Hi,
This might be a naive question, but I am looking to download and analyze some exome sequencing data from the 1000 genome project website....