13 results in 0.0040 seconds.
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Fastx-Toolkit - Analyze multiple files in directory (Linux/Qiime)
I am trying to run the fastq_quality_filter on a directory of .fastq files (~500) where each file has a unique name. I simply cannot get it to work on... -
Soapdenovo trans
A) After assembling scaffolds from the trimmed and quality filter reads, I am getting the following ratio Average_number_of_contigs_per_scaffold :-1.0... -
Fastx and Soapdenovo trans
Hello,
I have filtered my illumina pair-end reads (Forward lib-24 million reads, Reverse Lib 24 million) using FASTX_Quality_Filter by... -
Generating unique sequence from a fasta file
Hi,
I am a computer programmer with absolutely negligible biology background working on an application framework for analyzing the human... -
fastx quality trimmer and gzipped fastq
Hello -
I am using fastq_quality_trimmer tool from the Fastx toolkit to do some quality control on my gzipped fastq file. However, I keep...Last edited by balsampoplar; 03-07-2014, 02:37 PM. -
fastx_quality_stats error : input file (-) has unknown file format
Hi.
I was trying to check qualities of my fastq files from RNA-seq using fastx-toolkit, but I kept getting a following error.
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Exome sequencing quality filtering
Hi,
I am using exome sequencing data to call variants in patient samples and would like to know what quality control is generally applied... -
RNA Sequencing QC Error while using with Sequence_QC.sh file
Hi,
This is Shrujan kumar Madadha, I had an error while running QC for Drosophila Yukuba fastq RNA file using Sequence_QC.sh file of... -
Using quality filtered fastq files with TopHat
Hi all,
I want to use tophat with my paired-ends RNA-Seq data, which are in fastq format. The problem however is that after I quality filter my... -
Has anyone used FastX Toolkit with IonTorrent data?
Hi y'all,
Has anyone used FastX Toolkit with IonTorrent data? I'm trying to analyze my fastq files and I get errors like:
fastq_to_fasta:... -
FASTQC overrepresented Kmers:
Hi there,
Could somebody help in better understanding how kmers and overrepresented sequence can be used to get idea about primer/adapter...Last edited by Chirag; 08-22-2012, 02:01 PM. -
.png file not loading generated by fastx toolkit
I am using fastx toolkit and i generated the stats file. However, my boxplot generated a .png file but ubuntu says: failed to load image. Is there anyway... -
Fastx Toolkit for Quality Stats of data from new illumina pipeline software
Hi,
My data is in a new format generated by the new illumina pipeline software v 1.8. So, the quality scores are in Sanger FASTQ format...
