Soapdenovo trans

[Rahul shelke]

A) After assembling scaffolds from the trimmed and quality filter reads, I am getting the following ratio Average_number_of_contigs_per_scaffold :-1.0

B) For the untrimmed raw reads.... Average_number_of_contigs_per_scaffold :-1.2-1.4

C) Assembly in published paper showing around... Average_number_of_contigs_per_scaffold :-1.9

I don't know whether the problem in my scaffolds is due to input reads or else.....?

Any suggestion will be highly appreciated...