10 results in 0.0022 seconds.
-
alignment view and vcf disagree
I have a pacbio CCS fastq file that I have aligned to a small (5037 bp) reference which is part of a sequenced BAC clone. I have aligned this data with... -
Genotype call incorrect in freebayes output?
So I ran freebayes 1.3.1 with all the default parameters on dog dna samples. I am getting this result for one of the samples (although it seems to be...Last edited by najoshi; 07-08-2020, 03:15 AM. -
Freebayes installing problem
Hi! I wish to use Freebayes to investigate on my aligned reads about any vcs, snps and similar, so i proceeded to install this program (on ubuntu) with... -
FreeBayes not standard haplotype calling
Dear,
It's the first time I'm trying to perform this type of analysis, and I'm not in a standard situation. Here's what I have.
... -
Tumor-only variant calling
I'm attempting to call SNVs in tumor samples without a paired normal sample. Some of these tumor samples can have low purity, so the allelic frequency... -
A union of alleles file for glia
Does anyone have suggestions for generating the union of alleles file that is fed into glia to perform realignment for freebayes.
I am... -
downstream analysis of pooled population samples
It is generally recommended that pooled population samples (meaning a pool of individuals from a population sequenced without barcodes) be analyzed using... -
freebayes
Hi,
I am using FreeBayes for SNP calling. When I input my sequences Freebayes runs fine until it hits a part of the sequence with a lot of NNNNs.... -
freebayes with ogap
Hi !
I am trying to use freeBayes for variant calling and run into problems with the example provided in the freeBayes package.
... -
Error when uisng Freebayes VCF output with GATK SelectVariants
I am seeing this error in the VariantSelect tool when I give it the output from Freebayes:
...Code:MESSAGE: The provided VCF file is malformed
