Hi all!
I'm currently working with a multi entry genbank file and two dataframes in order to add new qualifiers to the genbank file via...
17 results in 0.0031 seconds.
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Adding Features to a GenBank File - Any Help?
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Download all bacteria genomes in .gbk format
Hello all,
Sorry if this has been posted before, but after searching the internet I seem to be at a dead end.
I currently... -
gff2gbSmall
Hi, everyone.
I am in trouble converting gff format file to genbank format.
The gff format file looks like:
Scaffold_15;HRSCAF=18|... -
Choice of submitting DNA sequences to GenBank versus ENA Sequence
BACKGROUND:
As most of you are aware, three large, international sequence repositories accept submissions of DNA sequence data: DDBJ [1], ENA Sequence... -
help genbank submit sequences
Hi, I am new here and the fisrt time to submit seq in genbank.
I need create initial mRNA with CDS intervals and for that I need import protein... -
genbank submission
Dear all,
I am trying to submit sequences to genbank but I am told my records cannot be accepted because they contain bad annotation or... -
extracting the feature tabe from an annotated. emblem file
Hi all.
I wish to submit a complete genome for submission to ncbi genbank using tbl2asn. I have an annotated. Embl. File from the authors as well... -
surprisingly hard: Going from Genbank Accession number to Genome Name
Hi everybody,
I wrote an automated FASTQ based 16S rrna searcher, so you give it your FASTQ and it tells you which 16S matches it best.... -
Slicing genbank file using biopython [problem]
Hello, i'd like to slice multiple genbank files using biopython at different location:
slice genome 1 at location 1. I have already coded this... -
Adding features to a multi entry genbank
I'm attempting to add features using BioPython to a multi-entry Genbank. Each entry in the genbank is a contig, and I'd like to annotate some BLAST hits.... -
NCBI standards for genome annotation after contig reduction
Hi community,
I have been using a bacterial draft genome from GenBank for RNA-seq project. In order to reduce genome contig number, I used... -
Download Human Genome
I want to download assembled human genome from nbci site to calculate some statistics on it. I found GRCh37 in the link below
http://www.ncbi.... -
Bioperl MSG: seq doesn't validate fetch genbank from NCBI using GI
I am trying to fetch genebank features, this code works for some GenbankIDs but not for this one as an example.
use strict;
use warnings;... -
download all available genomes by genus
Hi!
I`d like to get all bacterial genomes of some genus. There a lot of species already sequenced with a lot of strains as I can see in Genbank.... -
Sequence from Genbank file
Hi,
I used to usethis code to download sequence from genabnk ,now bioperl complains about sequence is empty, do yiu know if gen bank structure...
