Hello,
I'm trying to run stringtie with a reference genome, and I'm getting the following error:
WARNING: no reference transcripts...
5 results in 0.0022 seconds.
-
stringtie error: GFF not recognized
-
Hisat2 vs Tophat2 variation between tech reps
I have a question regarding the variability of FPKM I am seeing between technical replicates in the Hisat2, stringtie pipeline. When I plot technical... -
HISAT2: advantages of build index using annotated transcripts
Hello,
after reading the paper, I am still not sure about what is the advantage of building an index for HISAT2 by calling hisat2-build with...Last edited by dekontrol; 06-22-2017, 10:46 PM. -
HISAT2 unmapped reads
Hi all, I am using HISAT2 and trying to write unmapped reads from paired-end data and the flag --un is resulting in empty files. I know they are not all... -
HISAT XS attribute
Hi,
I've been aligning some unstranded RNAseq data using HISAT, then using cuffdiff to create fpkm tables.
I've encountered...Last edited by timless; 03-24-2015, 08:10 PM.
