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ndovro started a topic Discrepancy between samtools IDXSTATS and depth

in Bioinformatics

11-21-2019, 08:09 PM
Discrepancy between samtools IDXSTATS and depth

Hi all,
i am baffled from some results and i was wondering if anyone can help.

I am doing RNAseq.

I got my sample,...

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serhatg started a topic How to use samtools idxstats <bamfile>

in Bioinformatics

07-02-2014, 03:19 AM
How to use samtools idxstats <bamfile>

Hi all,

I'd like to get the number of all reads in a bam file by using samtools idxstats <bamfile> in samtools library;however, the...

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Last edited by serhatg; 07-02-2014, 03:38 AM.
GenoMax started a topic idxstats option for samtools

in Bioinformatics

08-10-2011, 06:42 AM
idxstats option for samtools

I searched for previous posts on this but the question below was not explicitly answered in the three threads I found.

So here goes:...

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