18 results in 0.0047 seconds.
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graph mapping application
Is anyone familiar with the graph mapping analysis programs that can incorporate the new pangenome graph maps (I probably have my terminology wrong here).... -
RNA-editing pipeline for miRNAs?
Hi everyone,
Apparently my first post was not published so I try again with a more general question.
I'm trying to find a proper...Last edited by sombrajo; 09-20-2017, 05:09 AM. Reason: Duplicated post because the first one was not visible until today, I don't know why... -
Do UMIs reduce small RNA-Seq bias?
Our recent blog post explores strategies for reducing bias in small RNA sequencing, including the use of UMIs and randomized adapters.Last edited by Bioo Scientific; 06-29-2017, 10:19 AM. -
Recommended pipeline for differential miRNA-seq
Dear all,
I was a SeqAnswers member few years ago while working on human genetics at Kings' College London. I just re-registered again,... -
ENCODE long-rna-seq-pipeline
Hi there. I was trying to use ENCODE long-rna-seq-pipeline to analyze miRNA-seq data (https://github.com/ENCODE-DCC/long-r...ne/releases/ta... -
The miRNA pipeline used by TCGA
Hi there, I was wondering if there is any description about the pipeline to process miRNA-Seq in TCGA.
Thanks! -
Existing miRNA-Seq processing pipeline/tools
Hi there. I am about to start doing some miRNA-seq analysis and pipeline development.
Could anyone give me some suggestions on the existing... -
microRNA expression from TCGA
Hello,
I want to analyze the microRNA BRCA expression for certain patient IDs from TCGA data portal. I have downloaded the level 3 data using...Last edited by bsharmi; 10-15-2014, 07:17 AM. -
miRNA alignment
Hi all,
I have not done miRNA data analysis before, I have a small question regarding miRNA read mapping. The miRNAs are generated either...Last edited by goutham.atla; 04-21-2014, 03:17 PM. -
Obtaining genomic features from miRNA-seq data based on UCSC hg19 alignment results
I have miRNA-seq data (single end) which I map to the whole UCSC hg19 genome. Now given the SAM output of this mapping, what's the good pipeline to summarize...Last edited by foolishbrat; 01-29-2014, 05:30 AM. -
bowite query about miRNA-seq
Hello all,
I have aligned miRNA short reads by bowtie with -n 1 -l 18 and was expected mapped output with not less than 18 nt as i have restricted...Last edited by unique379; 12-10-2013, 04:16 AM. -
MIREAP - optimizing options for different species?
Hello all,
I'm trying to discover novel miRNAs in avian species and I was wondering if anyone has any experience with using MIREAP and... -
Finding putative targets for novel miRNAs produced from miRNA-seq analysis
Hello,
I recently used mirAnalyzer to predict novel miRNA's from Illumina sequencing. I was wondering if anyone had suggestions on how... -
Paired-end miRNA pairs to be used as replicates?
Dear community,
I wanted to ask your advice on the following question:
I have 2 conditions(datasets) of illumina paired-end... -
Publically available miRNAs in csfasta download
Hello all,
does anyone know, where can i download publicly available .csfasta and corresponding .qual data for miRNA ???
Thanks...
