microRNA expression from TCGA

bsharmi

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Join Date: Oct 2014

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#1

microRNA expression from TCGA

10-15-2014, 07:06 AM

Hello,

I want to analyze the microRNA BRCA expression for certain patient IDs from TCGA data portal. I have downloaded the level 3 data using miRNAseq filter. But I am not sure how to process the data or get the expression data. I searched for one patient ID and downloaded mirna quantification and isoform quantification text files under the level 3 folder.
I searched in TCGA user guide but did not find or may have missed how to get expression values.
Can someone please help me?

Thanks so much!

P.S I found Expression-miRNA in https://wiki.nci.nih.gov/display/TCG...sSpecification, but I don't see a file in the download folder

Last edited by bsharmi; 10-15-2014, 07:17 AM.
Tags: mirna seq problem, mirna-seq, tcga
GenePool

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Join Date: Mar 2014

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#2

11-22-2014, 03:12 AM

Hi,

We have made the Breast Cancer microRNA level 3 data freely available as part of a free preview of GenePool's premium content. This data is prepped and ready to analyze in GenePool.

The Cancer Genome Atlas (TCGA) available in GenePool - SEQanswers

http://seqanswers.com/forums/showthread.php?t=48485

Registered SEQanswers sponsors/vendors can post commercial content here. Please support our sponsors!

Cheers!

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Products @ www.stationxinc.com

Last edited by GenePool; 11-23-2014, 09:24 PM.
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