Hello !
I am doing genome sequence alignment using MUMmer, in particular I want to do a dotplot with mummerplot. So the passages that I...
17 results in 0.0032 seconds.
-
What is the file .mums created by mummer ?
-
What is the file .mums created by mummer ?
Hello !
I am doing genome sequence alignment using MUMmer, in particular I want to do a dotplot with mummerplot. So the passages that I... -
Can't find show-aligns in mummer
Hi,
I am trying to use mummer: http://mummer.sourceforge.net/manual/#mappingdraft
to align a contig to a reference genome... -
MUMmer plot full of dots and no diagonal lines
I know from the MUMmer manual that a perfect alignment should, ideally, show a red diagonal line going from the bottom to up in the plot. However, I used... -
Does MUMmer reorder the query sequences?
Hello,
I'm using NUcmer and mgaps from MUMmer to find indels between a reference and a draft genome. The mgaps output is neat and almost... -
Amos/MuMMer/Minimus2 postnuc running multikmer assembly
Hello,
I am using the following protocol to Merge a multikmer assembly using CDHit && Amos.
protocol: http://ged.msu.e... -
How to construct chromosomes from scaffolds of a subspecies
Hi I have a genome of a wild plant subspecies in the form of about 200K scaffolds of various sizes from a few thousand bp to over 50kb. I am trying to... -
Reverse complementary reads in Mummmer
The repeat-match program in mummer, claims to return reverse complementary repeats, and mark them with 'r'. However, I found that the repeats returned... -
Mummer in hadoop
Hi all,
How can we implement mummer algorithm in hadoop using mapreduce program? -
Question about Delta-Filter for MUMmer
I'm trying to associate some genomic contigs with one of several references using Mummer. What I can't seem to figure out is how to successfully remove... -
Suffix Tree in Mummer
Hi
I was using mummer tool which seems to be performing at par with high end servers.
I was thinking to save the suffix... -
Getting the consensus file from a reference based alignment
Hi,
I have a Mapped genome fasta file with chromosomes scaffolds and a denovo contigs sequences all together in a Multifasta file.
... -
what are the headers on the nucmer .snp file?
I'm using RATT (rapid annotation transfer tool) and part of the output is a "nucmer.<custom file name>.snp" file. I assme this is a snp... -
mummerplot error
Good day,
Help me please with plotting mummer alignment.
I've created out.mums file with command
../sparseMEM/mummer -mum... -
MUMmer's (probably) strange behavior
Hi,
I'm trying to use MUMmer to align two plant genomes - A. thaliana (120MB) and A. lyrata (240MB). The two species are fairly close - 5...Last edited by flobpf; 04-23-2012, 05:53 AM.
