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jm1789 · 11-12-2019, 01:33 PM

Hi all,

Is it possible for contig and scaffold N50s to be very similar (e.g. within 2-3k bp) or the exact same? I have seen a few examples...

bio_informatics · 02-12-2016, 12:29 PM

Hi Members,

I'm stuck with N50 and L50.
Have paired end genome. E. coli isolates. Assembled with SPAdes, and quality using Quast....

standonn · 01-12-2015, 03:16 AM

Dear all,

I have run SOAP de Novo to assemble a nematode genome.
SOAP de Novo output a stats file .scafStatistics which I do not...

Lagartixa · 05-23-2014, 09:19 AM

Hello people!

I am doing a de novo transcriptome assembly and after reading the literature I went for Oases. Even though it seemed to give...

TheSnake · 07-13-2013, 02:12 AM

Hi there,
this is my first post in SEQanswers but I looked the community from long time.
I started these last 6 month to work with metagenomics...

kbradnam · 04-25-2013, 10:25 AM

Hi,

I just posted some slides (with notes) from a talk I gave recently about Assemblathon 2. The introductory part of this talk — which...

maasha · 08-17-2009, 06:13 AM

Could someone please explain the meaning of N50 - the values provide a standard measure of assembly connectivity.

Martin

Contig and scaffold N50