Hello all,
Using BLAST, I am trying to identify thousands of sequences. To make my job a bit easier, I would like to classify these sequences...
9 results in 0.0022 seconds.
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BLAST taxid to complete linage using biopython on a local machine.
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Problem with installation of blaSTorage
Hey
I have a problem with installation of blaSTorage on my ubuntu. I have a many results from standalone psiblast and i read that the new... -
Converting tab-delimited text file into HTML/PDF/latex/knitr report.
I have a bash script that takes ABI file as input and uses ANNOVAR for annotating the variants. A tab-delimited text file is produced that contains the... -
Parsing Smith-Waterman Alignment EMBOSS
Hi all,
I'm using the Smith-Waterman algorithm of EMBOSS to automaticaly do pairwise sequence alignments.
Afterwards I want to filter them... -
Extracting the pattern not matching
Hi there,
I have a list of sequence id and I am trying to extract the sequences from the proteome of the organism using these ids. I used... -
Parsing file to retrieve specific pattern
I have a txt file with several rows. Each row contains several words separated by space. I want to print the values which have pattern like amenXXXXXXX... -
Metrix - A Server / client parser for Illumina (InterOp) run directories
Hi,
A while ago our core facility ran into problems with obtaining run statistics for Illumina (HiSeq and MiSeq) runs.
Our desire...Last edited by Rhizosis; 02-22-2013, 01:12 AM. -
Help with Exonerate output
I'm doing some cdna to genomic dna alignments with exonerate but am having trouble parsing the output- not very good at that sort of thing.
I... -
Parsing error in BAM header
Hi~ I am pretty new to this area, having a hard time with these huge files..
I wanted to use IndelGenotyperV2 (from GATK) with my newly...
