53 results in 0.0024 seconds.
-
Genome assembly and annotation tips sharing
De novo genome assembly has become an affordable and achievable method to solve biological problems. Following the recent Genome of Animal and Plants... -
How to test average CPU and memory usage
Dear All,
I'm now testing some pipelines and want to compare their performance including usage of memory and CPU.
The code... -
Pipeline construction (metagenomics 101)
Hello guys / gals,
I really feel that this might be one of the last options and almost a cry for help, I've been reading and studying metagenomics... -
Dragen
When I first heard about Dragen, it sounded interesting but recently Edico has started to make this platform available on AWS, as well as several Bioinformatics-as-a-service... -
What does 'top=?' mean in a FASTA header?
I pipeline I am working with has a step which says:
echo "Rename OTU sequences. All OTU with 'top=?' regarded as 'Other'"
... -
Firebrowse Methylation Preprocessing CutOff
-
Recommended pipeline for differential miRNA-seq
Dear all,
I was a SeqAnswers member few years ago while working on human genetics at Kings' College London. I just re-registered again,... -
Combining VCF from different callers
Hi,
I'm searching for a tool to combine VCF files from different caller.
Since several paper now stated, what I've also... -
The miRNA pipeline used by TCGA
Hi there, I was wondering if there is any description about the pipeline to process miRNA-Seq in TCGA.
Thanks! -
Existing miRNA-Seq processing pipeline/tools
Hi there. I am about to start doing some miRNA-seq analysis and pipeline development.
Could anyone give me some suggestions on the existing... -
Basic and nieve Question in lncRNA analysis pipeline
Hi,
I have been analyzing RNA-Seq data sets of some Breast cancer cell lines to create a high confidence list of expressed lncRNAs. However... -
Mate pair de novo assembly
Hi everyone, i am having some problems with a de novo assembly. I have two MatePair files, one from Illumina MiSeQ and the other from IonTorrent. My problem... -
The problem with sensitivity analysis of somatic variant caller
Hello!
I'm working on somatic variant identification from cancer samples. So, I try to simulate Illumina paired-end read with known variants... -
On #IAmAResearchParasite, professional development and various RNA-Seq pipelines
Having just graduated with a M.Sc. I've got some free-time I would like to dedicate to learning some new bioinformatics software.
RNA-seq... -
Nephele:cloud-based microbiome analysis tool for 16S and WGS data
NIAID has announced the public launch of Nephele for your microbiome analysis needs.
Why Use Nephele? Nephele is designed to be a no-hassle, powerful...
