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  • rajeev.vikram
    Junior Member
    • Aug 2015
    • 6
    #1

    Basic and nieve Question in lncRNA analysis pipeline

    Hi,

    I have been analyzing RNA-Seq data sets of some Breast cancer cell lines to create a high confidence list of expressed lncRNAs. However as, I am new to NGS, I cannot figure out how do I filter out the known Expressed gene/protein coding transcripts from my annotation file after cufflinks assembly? Are there any specific tools to do the filtering? If anyone could help me regarding this, I will really appreciate.

    Thanks
    Tags: lncrna, ngs, pipeline, rna-sequencing
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