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lre1234 started a topic GATK BaseRecalibrator -output bam

in Bioinformatics

06-04-2013, 04:59 AM
GATK BaseRecalibrator -output bam

Hi,
I am doing my post-alignment processing on whole genomes (~40X) coverage. My aligned bam files are each ~100GB in size. After I go through...

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lre1234 started a topic GATK - PrintReads

in Bioinformatics

05-28-2013, 04:11 AM
GATK - PrintReads
Hi all,
I am trying to use the GATK PrintReads function following the BaseQualityRecalibrator using the following command:

Code:

...
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