Hello All,
I would like to know if there are any specific programs out there that help to identify promoters in PLANTS. Specifically I...
11 results in 0.0080 seconds.
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Promoter Identification programs
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Retrieving promoter sequences using gene symbol
Hi all,
I've been working on this for a few days and don't seem to be getting anywhere.
I have a list of gene symbols (example... -
ChIP-seq annotation bidirectional promoters: any tool?
Hi all,
I am annotating peaks from a ChIP-seq experiment.
The problem I face is that some of the peaks fall on bidirectional... -
Motif finding for many clusters
I thought this might well be useful for some: when you have to do motif finding for a large number of gene clusters it can be a challenge processing all...Last edited by SaschaOtt; 09-26-2014, 10:57 AM. -
Predicting promoter sites from NGS experiments
Hi,
is it possible to predict promoter sites from NGS experiments? Given a set of RNAseq experiments (human, triplicates) of several biological... -
GC Content Analysis on Promoters
Hi All,
I have a set of sequences for genes promoters. To study the regulation mechanisms beyond these genes, I am trying to find motifs... -
Promoter analysis with Drosophila
Hi all,
I am new to the field. I have set of drosophila mel. genes (~1000
) and need analyze them to find common cis elements present...
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finding promoters using ensembl biomart
Hi,
I have found the upstream promoter of length 200 for some genes using Ensembl Biomart. But my supervisor asked me to find 10 promoter... -
5' promoter/alignment question
I am looking at TFBS analysis for a colleague. He is interested in TRANSFAC but it being commercial I am interested in JASPAR. From Wasserman and Sandelin... -
Promoter regions hg19
Does anyone know of a downloadable data set that lists all of the predicted promoter regions in the human genome? I understand promoters can be defined... -
Download promoter sequence db for human genome?
Hi all!
Sorry for the slightly off topic question, but....
Does anyone know where I can find a downloadable database of...
