I'm looking for help with running RepeatMasker on RepeatScout output. The documentation just says
"RepeatMasker is run on the sequence...
21 results in 0.0032 seconds.
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RepeatScout and RepeatMasker
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Repeatmasker run with crossmatch
Hello All,
I am running repeatmasker on a 2.1G genome that is assembled into 10 psuedomolecules. I am using the following parameter... -
Reconstruction method of repeatMasker output
Hi everyone
I'd like to ask you about reconstruction method of repeatMasker output.
These days, I started my new research project... -
RepeatModeler - problem with creating library for RepeatMasker
Hi everyone!
I was trying to build library with RepeatModeler from fasta seqences (containing only transposons) of some species of fish.... -
Question RepeatMasker vs. BLAST - e-Value
Hi,
So I was looking at my data with RepeatMasker for some repetitive ~100bp sequences from my customRepLib. I was just looking for their... -
DFam database: what on earth is a "cut and paste" repeat?
Hi All,
Downloaded some repeat-masking data from DFam (http://www.dfam.org/) and along with LINE, SINE, LTR etc repeats it includes a... -
RepeatMasker and BLAST
Hi all,
I am trying select sequences for capture enrichment using an unpublished genome of the same species available from NCBI as a reference.... -
Repeatmasker - suggestion
I am running repeat masker on a server, but it was failed in between when there was power shut down. Do you know the command to start again from where... -
RepeatMasker-help
I would like to use repeatmasker to identify repetitive element in my de novo assembled genome. I have installed repeatmasker with repbase database in... -
Repeatmasker - How to make searches for low complexity regions less stringent?
I am using RepeatMasker only to find regions of low-complexity regions of DNA. With the default settings "100 bp stretch of DNA is masked when it... -
Missing RepeatMasker output? Literally nothing.
It is a real head-scratcher for me.
After no errors and completely running through all cycles, RepeatMasker finishes but there are no... -
My repeatmasker(short for RM) seems weird
Hi, I have run RM with cross_match engine and 20 processors. But when I checked the processors I found something strange. When I type
$... -
RepeatMasker for 7.5 GB of FASTA data
Hi,
I am trying to use RepeatMasker with full fasta file. The size of my fasta file is 7.5 GB and i would like to identify all repeats.... -
RepeatMasker track UCSC in R
Hi,
I have problems loading the repeatmasker track from UCSC into R. I try to use the makeFeatureDbFromUCSC function from the GenomicFeatures... -
How to build combined library for repeatmasker?
I want to to perform repeatmasking on ant genome. Ant is also included in the repeat library obtained from Repbase. The library RepeatMaskerLib.embl also...
